Serveur d'exploration sur le peuplier

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Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.

Identifieur interne : 001035 ( Main/Exploration ); précédent : 001034; suivant : 001036

Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.

Auteurs : Bo Liu [République populaire de Chine] ; Guo-Hong Liu [République populaire de Chine] ; Xiao-Ying Wang [République populaire de Chine] ; Jie-Ping Wang [République populaire de Chine] ; Yu-Jing Zhu [République populaire de Chine] ; Hai-Feng Zhang [République populaire de Chine] ; Cetin Sengonca [Allemagne]

Source :

RBID : pubmed:29111966

Descripteurs français

English descriptors

Abstract

A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347T, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347T to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720T (96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347T and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347T represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347T (=DSM 104632T=CCTCC AB 2016257T).

DOI: 10.1099/ijsem.0.002476
PubMed: 29111966


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Le document en format XML

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<term>Bacillus (classification)</term>
<term>Bacillus (genetics)</term>
<term>Bacillus (isolation & purification)</term>
<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>Cell Wall (chemistry)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Diaminopimelic Acid (chemistry)</term>
<term>Fatty Acids (chemistry)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Peptidoglycan (chemistry)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Vitamin K 2 (analogs & derivatives)</term>
<term>Vitamin K 2 (chemistry)</term>
</keywords>
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<term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acide diamino-pimélique (composition chimique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Bacillus (classification)</term>
<term>Bacillus (génétique)</term>
<term>Bacillus (isolement et purification)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Paroi cellulaire (composition chimique)</term>
<term>Peptidoglycane (composition chimique)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Rhizosphère (MeSH)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Vitamine K2 (analogues et dérivés)</term>
<term>Vitamine K2 (composition chimique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en">
<term>Vitamin K 2</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en">
<term>Diaminopimelic Acid</term>
<term>Fatty Acids</term>
<term>Peptidoglycan</term>
<term>Phospholipids</term>
<term>Vitamin K 2</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
</keywords>
<keywords scheme="MESH" qualifier="analogues et dérivés" xml:lang="fr">
<term>Vitamine K2</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en">
<term>Cell Wall</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Bacillus</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr">
<term>Acide diamino-pimélique</term>
<term>Acides gras</term>
<term>Bacillus</term>
<term>Paroi cellulaire</term>
<term>Peptidoglycane</term>
<term>Phospholipides</term>
<term>Vitamine K2</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Bacillus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Bacillus</term>
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<term>Bacillus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Bacillus</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>China</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Rhizosphere</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Hybridation d'acides nucléiques</term>
<term>Microbiologie du sol</term>
<term>Phylogenèse</term>
<term>Rhizosphère</term>
<term>Techniques de typage bactérien</term>
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<front>
<div type="abstract" xml:lang="en">A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347
<sup>T</sup>
, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347
<sup>T</sup>
to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720
<sup>T</sup>
(96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347
<sup>T</sup>
and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347
<sup>T</sup>
represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347
<sup>T</sup>
(=DSM 104632
<sup>T</sup>
=CCTCC AB 2016257
<sup>T</sup>
).</div>
</front>
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<DateCompleted>
<Year>2018</Year>
<Month>01</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised>
<Year>2019</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>68</Volume>
<Issue>1</Issue>
<PubDate>
<Year>2018</Year>
<Month>Jan</Month>
</PubDate>
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<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.</ArticleTitle>
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<MedlinePgn>155-159</MedlinePgn>
</Pagination>
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<Abstract>
<AbstractText>A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347
<sup>T</sup>
, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347
<sup>T</sup>
to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720
<sup>T</sup>
(96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347
<sup>T</sup>
and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347
<sup>T</sup>
represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347
<sup>T</sup>
(=DSM 104632
<sup>T</sup>
=CCTCC AB 2016257
<sup>T</sup>
).</AbstractText>
</Abstract>
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</AffiliationInfo>
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<ForeName>Guo-Hong</ForeName>
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<Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
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<LastName>Wang</LastName>
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<Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
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<AffiliationInfo>
<Affiliation>Fuzhou University, Fuzhou, Fujian 350108, PR China.</Affiliation>
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<Author ValidYN="Y">
<LastName>Sengonca</LastName>
<ForeName>Cetin</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>Institute of Crop Sciences and Resource Conservation (INRES), University of Bonn, Meckenheimer Allee 166A D-53115 Bonn, Germany.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
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<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2017</Year>
<Month>11</Month>
<Day>07</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010457">Peptidoglycan</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>583-93-7</RegistryNumber>
<NameOfSubstance UI="D003960">Diaminopimelic Acid</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>8427BML8NY</RegistryNumber>
<NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D001407" MajorTopicYN="N">Bacillus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D003960" MajorTopicYN="N">Diaminopimelic Acid</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010457" MajorTopicYN="N">Peptidoglycan</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Bacillus populi sp. nov.</Keyword>
<Keyword MajorTopicYN="N">Populus euphratica</Keyword>
<Keyword MajorTopicYN="N">Taklamakan desert</Keyword>
<Keyword MajorTopicYN="N">rhizosphere soil</Keyword>
<Keyword MajorTopicYN="N">taxono-genomics</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="pubmed">
<Year>2017</Year>
<Month>11</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2018</Year>
<Month>1</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2017</Year>
<Month>11</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">29111966</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002476</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations>
<list>
<country>
<li>Allemagne</li>
<li>République populaire de Chine</li>
</country>
<region>
<li>District de Cologne</li>
<li>Rhénanie-du-Nord-Westphalie</li>
</region>
<settlement>
<li>Bonn</li>
</settlement>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Liu, Bo" sort="Liu, Bo" uniqKey="Liu B" first="Bo" last="Liu">Bo Liu</name>
</noRegion>
<name sortKey="Liu, Guo Hong" sort="Liu, Guo Hong" uniqKey="Liu G" first="Guo-Hong" last="Liu">Guo-Hong Liu</name>
<name sortKey="Wang, Jie Ping" sort="Wang, Jie Ping" uniqKey="Wang J" first="Jie-Ping" last="Wang">Jie-Ping Wang</name>
<name sortKey="Wang, Xiao Ying" sort="Wang, Xiao Ying" uniqKey="Wang X" first="Xiao-Ying" last="Wang">Xiao-Ying Wang</name>
<name sortKey="Wang, Xiao Ying" sort="Wang, Xiao Ying" uniqKey="Wang X" first="Xiao-Ying" last="Wang">Xiao-Ying Wang</name>
<name sortKey="Zhang, Hai Feng" sort="Zhang, Hai Feng" uniqKey="Zhang H" first="Hai-Feng" last="Zhang">Hai-Feng Zhang</name>
<name sortKey="Zhu, Yu Jing" sort="Zhu, Yu Jing" uniqKey="Zhu Y" first="Yu-Jing" last="Zhu">Yu-Jing Zhu</name>
</country>
<country name="Allemagne">
<region name="Rhénanie-du-Nord-Westphalie">
<name sortKey="Sengonca, Cetin" sort="Sengonca, Cetin" uniqKey="Sengonca C" first="Cetin" last="Sengonca">Cetin Sengonca</name>
</region>
</country>
</tree>
</affiliations>
</record>

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