Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.
Identifieur interne : 001035 ( Main/Exploration ); précédent : 001034; suivant : 001036Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.
Auteurs : Bo Liu [République populaire de Chine] ; Guo-Hong Liu [République populaire de Chine] ; Xiao-Ying Wang [République populaire de Chine] ; Jie-Ping Wang [République populaire de Chine] ; Yu-Jing Zhu [République populaire de Chine] ; Hai-Feng Zhang [République populaire de Chine] ; Cetin Sengonca [Allemagne]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2018.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acide diamino-pimélique (composition chimique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Bacillus (classification), Bacillus (génétique), Bacillus (isolement et purification), Chine (MeSH), Composition en bases nucléiques (MeSH), Hybridation d'acides nucléiques (MeSH), Microbiologie du sol (MeSH), Paroi cellulaire (composition chimique), Peptidoglycane (composition chimique), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Rhizosphère (MeSH), Techniques de typage bactérien (MeSH), Vitamine K2 (analogues et dérivés), Vitamine K2 (composition chimique).
- MESH :
- analogues et dérivés : Vitamine K2.
- composition chimique : Acide diamino-pimélique, Acides gras, Bacillus, Paroi cellulaire, Peptidoglycane, Phospholipides, Vitamine K2.
- génétique : ADN bactérien, ARN ribosomique 16S, Bacillus.
- isolement et purification : Bacillus.
- microbiologie : Populus.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Hybridation d'acides nucléiques, Microbiologie du sol, Phylogenèse, Rhizosphère, Techniques de typage bactérien.
English descriptors
- KwdEn :
- Bacillus (classification), Bacillus (genetics), Bacillus (isolation & purification), Bacterial Typing Techniques (MeSH), Base Composition (MeSH), Cell Wall (chemistry), China (MeSH), DNA, Bacterial (genetics), Diaminopimelic Acid (chemistry), Fatty Acids (chemistry), Nucleic Acid Hybridization (MeSH), Peptidoglycan (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH), Vitamin K 2 (analogs & derivatives), Vitamin K 2 (chemistry).
- MESH :
- chemical , analogs & derivatives : Vitamin K 2.
- chemical , chemistry : Diaminopimelic Acid, Fatty Acids, Peptidoglycan, Phospholipids, Vitamin K 2.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- chemistry : Cell Wall.
- classification : Bacillus.
- genetics : Bacillus.
- isolation & purification : Bacillus.
- microbiology : Populus.
- Bacterial Typing Techniques, Base Composition, China, Nucleic Acid Hybridization, Phylogeny, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology.
Abstract
A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347T, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347T to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720T (96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347T and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347T represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347T (=DSM 104632T=CCTCC AB 2016257T).
DOI: 10.1099/ijsem.0.002476
PubMed: 29111966
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Bacillus (genetics)</term>
<term>Bacillus (isolation & purification)</term>
<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>Cell Wall (chemistry)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Diaminopimelic Acid (chemistry)</term>
<term>Fatty Acids (chemistry)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Peptidoglycan (chemistry)</term>
<term>Phospholipids (chemistry)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizosphere (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Vitamin K 2 (analogs & derivatives)</term>
<term>Vitamin K 2 (chemistry)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acide diamino-pimélique (composition chimique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Bacillus (classification)</term>
<term>Bacillus (génétique)</term>
<term>Bacillus (isolement et purification)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Paroi cellulaire (composition chimique)</term>
<term>Peptidoglycane (composition chimique)</term>
<term>Phospholipides (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Rhizosphère (MeSH)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Vitamine K2 (analogues et dérivés)</term>
<term>Vitamine K2 (composition chimique)</term>
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</keywords>
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<term>Fatty Acids</term>
<term>Peptidoglycan</term>
<term>Phospholipids</term>
<term>Vitamin K 2</term>
</keywords>
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<term>Acides gras</term>
<term>Bacillus</term>
<term>Paroi cellulaire</term>
<term>Peptidoglycane</term>
<term>Phospholipides</term>
<term>Vitamine K2</term>
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</keywords>
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<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Rhizosphere</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Hybridation d'acides nucléiques</term>
<term>Microbiologie du sol</term>
<term>Phylogenèse</term>
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<front><div type="abstract" xml:lang="en">A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347<sup>T</sup>
, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347<sup>T</sup>
to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720<sup>T</sup>
(96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347<sup>T</sup>
and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347<sup>T</sup>
represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347<sup>T</sup>
(=DSM 104632<sup>T</sup>
=CCTCC AB 2016257<sup>T</sup>
).</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">29111966</PMID>
<DateCompleted><Year>2018</Year>
<Month>01</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>12</Month>
<Day>11</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>68</Volume>
<Issue>1</Issue>
<PubDate><Year>2018</Year>
<Month>Jan</Month>
</PubDate>
</JournalIssue>
<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.</ArticleTitle>
<Pagination><MedlinePgn>155-159</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.002476</ELocationID>
<Abstract><AbstractText>A rod-shaped, endospore-forming, aerobic bacterium, designated FJAT-45347<sup>T</sup>
, was isolated from rhizosphere soil collected from the Taklamakan desert in Xinjiang (PR China). Growth was observed at 15-35 °C (optimum 25 °C), in 0 % and 20.0 % NaCl (optimum 8.0 %) and at pH 7.5-12.0 (optimum 8.0), respectively. The cell-wall peptidoglycan contained meso-diaminopimelic acid and the isoprenoid quinone was MK-7. The main fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The main polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Phylogenetic analysis based on 16S rRNA gene sequences affiliated FJAT-45347<sup>T</sup>
to the genus Bacillus, and it showed the highest sequence similarities to Bacillus clarkii DSM 8720<sup>T</sup>
(96.1 %). The average nucleotide identity and in silico DNA-DNA hybridization values between FJAT-45347<sup>T</sup>
and the most closely related species were 68.5 and 26.2 %, respectively, which were lower than the thresholds commonly used to define species (96 and 70 %, respectively), indicating that it represented a member of a different taxon. The DNA G+C content was 40.6 mol%. The phenotypic characters and taxono-genomics study revealed that FJAT-45347<sup>T</sup>
represents a novel species of the genus Bacillus, for which the name Bacilluspopuli sp. nov. is proposed. The type strain is FJAT-45347<sup>T</sup>
(=DSM 104632<sup>T</sup>
=CCTCC AB 2016257<sup>T</sup>
).</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Bo</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Guo-Hong</ForeName>
<Initials>GH</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Xiao-Ying</ForeName>
<Initials>XY</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Fuzhou University, Fuzhou, Fujian 350108, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Jie-Ping</ForeName>
<Initials>JP</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Yu-Jing</ForeName>
<Initials>YJ</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Hai-Feng</ForeName>
<Initials>HF</Initials>
<AffiliationInfo><Affiliation>Agricultural Bio-resource Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian 350003, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sengonca</LastName>
<ForeName>Cetin</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Institute of Crop Sciences and Resource Conservation (INRES), University of Bonn, Meckenheimer Allee 166A D-53115 Bonn, Germany.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>11</Month>
<Day>07</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010457">Peptidoglycan</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>583-93-7</RegistryNumber>
<NameOfSubstance UI="D003960">Diaminopimelic Acid</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>8427BML8NY</RegistryNumber>
<NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D001407" MajorTopicYN="N">Bacillus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003960" MajorTopicYN="N">Diaminopimelic Acid</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010457" MajorTopicYN="N">Peptidoglycan</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacillus populi sp. nov.</Keyword>
<Keyword MajorTopicYN="N">Populus euphratica</Keyword>
<Keyword MajorTopicYN="N">Taklamakan desert</Keyword>
<Keyword MajorTopicYN="N">rhizosphere soil</Keyword>
<Keyword MajorTopicYN="N">taxono-genomics</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2017</Year>
<Month>11</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2018</Year>
<Month>1</Month>
<Day>18</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2017</Year>
<Month>11</Month>
<Day>8</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">29111966</ArticleId>
<ArticleId IdType="doi">10.1099/ijsem.0.002476</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Allemagne</li>
<li>République populaire de Chine</li>
</country>
<region><li>District de Cologne</li>
<li>Rhénanie-du-Nord-Westphalie</li>
</region>
<settlement><li>Bonn</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Bo" sort="Liu, Bo" uniqKey="Liu B" first="Bo" last="Liu">Bo Liu</name>
</noRegion>
<name sortKey="Liu, Guo Hong" sort="Liu, Guo Hong" uniqKey="Liu G" first="Guo-Hong" last="Liu">Guo-Hong Liu</name>
<name sortKey="Wang, Jie Ping" sort="Wang, Jie Ping" uniqKey="Wang J" first="Jie-Ping" last="Wang">Jie-Ping Wang</name>
<name sortKey="Wang, Xiao Ying" sort="Wang, Xiao Ying" uniqKey="Wang X" first="Xiao-Ying" last="Wang">Xiao-Ying Wang</name>
<name sortKey="Wang, Xiao Ying" sort="Wang, Xiao Ying" uniqKey="Wang X" first="Xiao-Ying" last="Wang">Xiao-Ying Wang</name>
<name sortKey="Zhang, Hai Feng" sort="Zhang, Hai Feng" uniqKey="Zhang H" first="Hai-Feng" last="Zhang">Hai-Feng Zhang</name>
<name sortKey="Zhu, Yu Jing" sort="Zhu, Yu Jing" uniqKey="Zhu Y" first="Yu-Jing" last="Zhu">Yu-Jing Zhu</name>
</country>
<country name="Allemagne"><region name="Rhénanie-du-Nord-Westphalie"><name sortKey="Sengonca, Cetin" sort="Sengonca, Cetin" uniqKey="Sengonca C" first="Cetin" last="Sengonca">Cetin Sengonca</name>
</region>
</country>
</tree>
</affiliations>
</record>
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